1.
D. Song, R. Luo,H.F. Chen*. TheIDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins.J. Chem. Inf. Model.2017, 57:1166-1178.
2.
W. Ye,T. Qian,H. Liu,R. Luo,H.F. Chen*.Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations.J. Chem. Inf. Model.2017, 57:1153-1165.
3.
X. Guo, J. Han,R. Luo,H.F. Chen*.Conformation Dynamics of Intrinsically Disordered Protein c-Myb with ff99IDPs Force Field.RSC Advances. 2017, 7:29713 –29721.
4.
PoY. J. Ye,L. Zhou,X. Liu,H. Liu,D. Li,M. Cao,H.F. Chen,L. Xu,J. Zhu,Y. Zhao*. AnovelchemicalinhibitorofABAsignalingtargetsallABAreceptors.Plant Physiol.2017, 173:2356-2369.
5.
M. A. Hoque,Y. Zhang,L. Chen,G. Yang,M. A. Khatun,H.F. Chen,L. Hao,Y. Feng*.Stepwise Loop Insertion Strategy for Active Site Remodeling to Generate Novel Enzyme Functions.ACS Chem. Biol.2017,12:1188–1193.
6.
H. Liu, W. Ye,H.F. Chen*.Positive Cooperative Regulation of Double Binding Sites for Human Acetylcholinesterase.Chem. Biol. Drug Des.2017, 89:694-704.
7.
D. Song, W. Wang, W. Ye, D. Ji, R. Luo,H.F. Chen*.ff14IDPs Force Field Improving the Conformation Sampling of Intrinsically Disordered Proteins.Chem. Biol. Drug Des.2017, 89:5-15.
8.
T. Qian, J. Wo, Y. Zhang, Q. Song, G. Feng, R. Luo, S. Lin, G. Wu,H.F. Chen*. Crystal Structure of StnA for the Biosynthesis of Antitumor Drug Streptonigrin Reveals a Unique Substrate Binding Mode.Scientific Reports.2017, 7:40254.
9.
J. Zhang, C. Jiang, W. Ye, R. Luo,H.F. Chen*.Allosteric Pathways in Tetrahydrofolate Sensing Riboswitch with Dynamics Correlation Network.Mol. BioSyst.2017,13:156 -164.
10.
J. Zhang, H. Luo, H. Liu, W. Ye, R. Luo,H.F. Chen*. Synergistic Modification Induced Specific Recognition between Histone and TRIM24viaFluctuation Correlation Network Analysis.Scientific Reports.2016, 6: 24587.
11.
W. Wang, C. Jiang, J. Zhang, W. Ye, R. Luo,H.F. Chen*. Dynamics Correlation Network for Allosteric Switching of PreQ1 Riboswitch.Scientific Reports.2016,6: 31005.
12.
J. Yang, H. Liu, X. Liu, C. Gu,R. Luo,H.F. Chen*.Synergistic Allosteric Mechanism of Fructose-1,6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis.J. Chem. Inf. Model.2016,56: 1184-1192.
13.
M. Rahman,H. Liu, A. Wadood,H.F. Chen*. Allosteric Mechanism of Cyclopropylindolobenzazepine Inhibitors for HCV NS5B Rdrp via Dynamics Correlation Network Analysis.Mol. BioSyst.2016, 12:3280-3293.
14.
W. Ye, D. Ji, W. Wang, R. Luo,H.F. Chen*. Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins.J. Chem. Inf. Model.2015, 55: 1021-1029.
15.
D. Ji, W. Ye,H.F. Chen*.Revealing the binding mode between respiratory syncytial virus fusion protein and benzimidazolebased inhibitors.Mol. BioSyst.2015,11: 1857-1866.
16.
L. Xu,W. Ye,C. Jiang,J. Yang,J. Zhang,Y. Feng,R. Luo,H.F. Chen*. Recognition Mechanism between Lac Repressor and DNA with Correlation Network Analysis.J. Phys. Chem. B2015, 119: 2844-2856.
17.
K. Wu, J. Pang, D. Song, Y. Zhu, C. Wu, T. Shao,H.F. Chen*.Selectivity Mechanism of ATP-Competitive Inhibitors for PKB and PKA.Chem. Biol. Drug Des.2015, 86:9-18.
18.
W. Wang, W. Ye, C. Jiang, R. Luo,H.F. Chen*. New force field on modeling intrinsically disordered proteins.Chem. Biol. Drug Des.2014, 84:253-269.
19.
Q. Yu, W. Ye, C. Jiang, R. Luo,H.F. Chen*. Specific Recognition Mechanism between RNA and KH3 Domain of Nova-2 Protein.J. Phys. Chem. B. 2014. 118: 12426-12434.
20.
Q. Yu, W. Ye, W. Wang,H.F. Chen*.Global Conformational Selection and Local Induced Fit for the Recognition between Intrinsic Disordered p53 and CBP.PLoS ONE. 2013, 8:e59627.
21.
H. Zhang, Z. Liu, Y. Sun, J. Zhu, S. Lu, X. Liu, Q. Huang,Y. Xie, H. Zhu, S. Dang,H.F. Chen, G. Zheng, Y. Li, Y. Kuang, J. Fei, S. Chen, Z. Chen, Z.G. Wang*. Rig-I regulates NF-κB activity through binding to Nf-κb13′-UTR mRNA.Proc. Natl. Acad. Sci. U. S. A.2013, 110:6459-6464.
22.
W. Wang, W. Ye, Q. Yu, C. Jiang, J. Zhang, R. Luo,H.F. Chen*. Conformational Selection and Induced Fit in Specific Antibody and Antigen Recognition: SPE7 as a Case Study.J. Phys. Chem. B, 2013, 117:4912-4923.
23.
W. Ye, J. Yang, Q. Yu, W. Wang, J. Hancy,R. Luo,H.F. Chen*. Kink Turn sRNA Folding upon L7Ae Binding with Molecular Dynamics Simulation.Phys. Chem. Chem. Phys.2013, 15:18510-18522 .
24.
W. Ye, F. Qin,J. Zhang, R. Luo,H.F. Chen*.Atomistic Mechanism of microRNA Translation Upregulation via Molecular Dynamics Simulations.PLoS ONE. 2012, 7: e43788.
25.
W. Ye, Y. Chen, W. Wang, Q. Yu, Y. Li,J. Zhang,H.F. Chen*.Insight into the Stability of cross-beta Amyloid Fibril from VEALYL Short Peptide with Molecular Dynamics Simulation.PLoS ONE. 2012, 7: e36382.
26.F. Qin, W. Ye, Y. Chen, X. Chen, Y. Li, J. Zhang,H.F. Chen*.Specific Recognition between Intrinsically Disordered LEF and DNA.Phys. Chem. Chem. Phys.2012,14: 538-545.